Saturday 6 July 2024

BACTERIAL GROWTH CURVE & SPECIFIC GROWTH RATE

PURPOSE

To plot a growth curve and determine 

a) Generation time 

b) Specific growth rate of bacterial culture

PRINCIPLE

Bacterial population growth studies require inoculation of viable cells into a sterile broth medium and incubation of the culture under optimum temperature, pH and gaseous conditions. Under these conditions, the cells will reproduce rapidly and the dynamics of the microbial growth can be charted by means of a population growth curve, which is constructed by plotting the increase in cell numbers versus time of incubation. The curve can be used to delineate stages of the growth cycles. It also facilitates measurement of cell number and the rate of growth of a particular organism under standardized conditions as expressed by its generation time, the time required for a microbial population to double. The stages of a typical growth curve are:

1. Lag phase: During this stage the cells are adjusting to their new environment. Cellular metabolism is accelerated, resulting in rapid biosynthesis of cellular macromolecules, primarily enzymes, in preparation for the next phase of cycle. Although the cells are increasing in size, there is no cell division and therefore no increase in numbers.

2. Logarithmic (log) phase: Under optimum nutritional and physical conditions, the physiologically robust cells reproduce at a uniform and rapid rate by binary fission. Thus there is a rapid exponential increase in population, which doubles regularly until a maximum number of cells is reached. The time required for the population to double is the generation time. The length of the log phase varies, depending on the organism and the composition of the medium. The average may be estimated to last from 6 to 12 hours.

3. Stationary phase: During this phase the number of cells undergoing division is equal to the number of cells that are dying. Therefore there is no further increase in cell number and the population is maintained at its maximum level for a period of time. The primary factors responsible for this phase are the depletion of some essential metabolites and the accumulation of toxic acidic or alkaline end products in the medium.

4. Decline or death phase: The decrease in population due to death closely parallels its increase during the log phase. Theoretically the entire population should die during a time interval equal to that of log phase. This does not occur, however, since a small number of highly resistant organisms persist for an indeterminate length of time.

Construction of a complete bacterial growth curve requires that aliquots of a 24-h shake flask culture be measured for population size at intervals during the incubation period. Spectrophotometric measurement of developing turbidity at regular intervals can be used as an index of increasing cellular mass. The generation time can be determined by simple extrapolation from the log phase. Instead of cell number, it is often more convenient to use dry cell weight per volume X as a measure of cell biomass concentration. During the exponential phase in batch we can write:

dX/dt =μX where μ is the specific growth rate of the cells.

MATERIALS Culture:

12-18 h nutrient broth culture of E. coli DH5α

Medium: Nutrient Broth Ingredients gl-1,Peptic digest of animal tissue 5.00, Beef extract 3.00, Final pH (at 25°C) 6.9 ± 0.2, The above constituents were dissolved in requisite amount of distilled water. The media was sterilized in an autoclave.

Equipment & Accessories: Laminar hood, Orbital incubator shaker, 250 ml conical flasks, 15 ml test tubes, Glassware marker, 1.0 and 0.2 ml sterile disposable tips, Micropipettes

PROCEDURE

  1. An over-night culture of E. coli DH5α is used to inoculate 100 ml of nutrient broth in a 250 ml conical flask at 1% level.                                  
  2. The flask containing culture was incubated in an orbital shaker at 37°C, 180 rpm.                                                   
  3.  Aliquots of the culture were taken aseptically at regular intervals and the turbidity was measured in a spectrophotometer at 600 nm using nutrient broth as blank.                                                                                 
  4.  Optical density of the samples at 600 nm was recorded till 24 h of growth.     
  5. The O.D600 values as a function of time were plotted in a semi-log paper to generate the growth curve.                                                      
  6.  The generation time of the bacteria can be determined by extrapolation from the growth curve.                 
  7.   Plot the growth curve and calculate the generation time from the curve.                                                       
  8.  The biomass concentration in different samples is obtained by use of calibration curve obtained earlier.                                                   
  9.  A graph is plotted between biomass concentrations vs. time.        
  10.  Linear part of the graph, which is exponential phase of growth, is taken for specific growth calculation.

OBSERVATIONS AND RESULTS

Time

OD at 640nm

0 Hour

0.072

1 Hour

0.145

1 Hour 30 Minute

0.221

2 Hour

0.427

2 Hour 30 Minute

0.632

3 Hour

0.761

3 Hour 30 Minute

0.801


Result

In the stationary phase, the rate of growth of the cells becomes equal to its rate of death. The rate of growth of the bacterial cells is limited by the accumulation of toxic compounds and also depletion of nutrients in the media. The cell population remains constant at this stage.

 

Friday 5 July 2024

To perform different types of staining of given sample Simple stain, Differential stain, Structural or special stains, Gram staining, Acid-fast staining

Introduction

Staining is technique used in microscopy to enhance contrast in the microscopic image. Stains and dyes are frequently used in biological tissues for viewing, often with the aid of different microscopes. Stains may be used to define and examine bulk tissues (highlighting, for example, muscle fibers or connective tissue), cell populations (classifying different blood cells, for instance), or organelles within individual cells. Bacteria have nearly the same refractive index as water, therefore, when they are observed under a microscope they are opaque or nearly invisible to the naked eye. Different types of staining methods are used to make the cells and their internal structures more visible under the light microscope. Microscopes are of little use unless the specimens for viewing are prepared properly. Microorganisms must be fixed & stained to increase visibility, accentuate specific morphological features, and preserve them for future use.

Stain

A stain is a substance that adheres to a cell, giving the cell color. The presence of color gives the cells significant contrast so they are much more visible. Different stains have different affinities for different organisms, or different parts of organisms. They are used to differentiate different types of organisms or to view specific parts of organisms.

Staining techniques

Direct staining - The organism is stained and background is left unstained              

Negative staining - The background is stained and the organism is left unaltered Stains are classified as 

  • Simple stain
  • Differential stain
  • Structural or special stains

Fixing Before staining it is essential to fix the bacterial sample on to the slide. Smear is prepared in the following way:                                                                                                                                                

  1. With a wire loop place a small drop of the broth culture or a loop full of bacteria on a clean slide. 
  2. Place a drop of water over it.                                                                                                             
  3. Spread the culture so as to form a thin film.                                                                                      
  4. Allow slide to dry in the air or by holding it above a bunsen flame.                                                 
  5. Avoid excess heating.

The purpose of fixation is to kill the microorganisms, coagulate the protoplasm of the cell and cause it to adhere to the slide Simple Staining The staining process involves immersing the sample (before or after fixation and mounting) in dye solution, followed by rinsing and observation. Many dyes, however, require the use of a mordant, a chemical compound that reacts with the stain to form an insoluble, coloured precipitate. When excess dye solution is washed away, the mordant stain remains. Simple staining is one step method using only one dye. Basic dyes are used in direct stain and acidic dye is used in negative stain. Simple staining techniques is used to study the morphology better, to show the nature of the cellular contents of the exudates and also to study the intracellular location of the bacteria.

Differential Staining

Differential Stains use two or more stains and allow the cells to be categorized into various groups or types. Both the techniques allow the observation of cell morphology, or shape, but differential staining usually provides more information about the characteristics of the cell wall (Thickness). Gram staining (or Gram’s method) is an empirical method of differentiating bacterial species into two large groups (Gram-positive and Gram-negative) based on the chemical and physical properties of their cell wall. The Gram stain is almost always the first step in the identification of a bacterial organism, While Gram staining is a valuable diagnostic tool in both clinical and research settings, not all bacteria can be definitively classified by this technique, thus forming Gram variable and Gram indeterminate groups as well.

Gram staining

Gram Staining is the common, important, and most used differential staining techniques in microbiology, which was introduced by Danish Bacteriologist Hans Christian Gram in 1884. This test differentiates the bacteria into Gram Positive and Gram Negative Bacteria, which helps in the classification and differentiations of microorganisms.

Principle of Gram Staining

When the bacteria is stained with primary stain Crystal Violet and fixed by the mordant, some of the bacteria are able to retain the primary stain and some are decolorized by alcohol. The cell walls of gram positive bacteria have a thick layer of protein-sugar complexes called peptidoglycan and lipid content is low. Decolorizing the cell causes this thick cell wall to dehydrate and shrink which closes the pores in the cell wall and prevents the stain from exiting the cell. So the ethanol cannot remove the Crystal Violet-Iodine complex that is bound to the thick layer of peptidoglycan of gram positive bacteria and appears blue or purple in colour. In case of gram-negative bacteria, cell wall also takes up the CV-Iodine complex but due to the thin layer of peptidoglycan and thick outer layer which is formed of lipids, CV-Iodine complex gets washed off. When they are exposed to alcohol, decolorizer dissolves the lipids in the cell walls, which allows the crystal violet-iodine complex to leach out of the cells. Then when again stained with saffranin, they take the stain and appear red in color.

Materials Required:

Clean glass slides, inoculating loop, Bunsen burner, Bibulous paper, Microscope, Lens paper and lens cleaner, Immersion oil, Distilled water, 18 to 24 hour cultures of organisms

Reagents:

  1. Primary Stain - Crystal Violet 
  2.  Mordant - Grams Iodine      
  3.  Decolorizers - Ethyl Alcohol                                          
  4.   Secondary Stain - Saffranin

Gram Stain Procedure

  1. Place slide with heat fixed smear on staining tray.
  2. Gently flood smear with crystal violet and let stand for 1 minute.
  3. Tilt the slide slightly and gently rinse with tap water or distilled water using a wash bottle.
  4. Gently flood the smear with Gram’s iodine and let stand for 1 minute.
  5. Tilt the slide slightly and gently rinse with tap water or distilled water using a wash bottle. The smear will appear as a purple circle on the slide.
  6. Decolorize using 95% ethyl alcohol or acetone. Tilt the slide slightly and apply the alcohol drop by drop for 5 to 10 seconds until the alcohol runs almost clear. Be careful not to over-decolorize
  7.  Immediately rinse with water.
  8. Gently flood with saffranine to counter counter-stain and let stand for 45 seconds.
  9. Tilt the slide slightly and gently rinse with tap water or distilled water using a wash bottle.
  10.  Blot dry the slide with bibulous paper.
  11. View the smear using a light-microscope under oil-immersion.

Interpretation

Gram Positive: Blue/Purple Color                                                                                    

Gram Negative: Red Color

Gram Positive Bacteria: Actinomyces, Bacillus, Clostridium, Corynebacterium, Enterococcus, Gardnerella, Lactobacillus, Listeria, Mycoplasma, Nocardia, Staphylococcus, Streptococcus, Streptomyces ,etc.

Gram Negative Bacteria: Escherichia coli (E. coli), Salmonella, Shigella, and other Enterobacteriaceae, Pseudomonas,Moraxella, Helicobacter, Stenotrophomonas, Bdellovibrio, acetic acid bacteria, Legionella etc.

Acid-fast staining

The Ziehl–Neelsen stain, also known as the acid-fast stain, widely used differential staining procedure. The Ziehl – Neelsen stain was first described by two German doctors; Franz Ziehl (1859 to 1926), a bacteriologist and Friedrich Neelsen (1854 to 1894) a pathologist. In this type some bacteria resist decolorization by both acid and alcohol and hence they are referred as acid-fast organisms. This staining technique divides bacteria into two groups namely acid-fast and non acid-fast. This procedure is extensively used in the diagnosis of tuberculosis and leprosy. Mycobacterium tuberculosis is the most important of this group, as it is responsible for the disease called tuberculosis (TB) along with some others of this genus

Principle

Mycobacterial cell walls contain a waxy substance composed of mycolic acids. These are βhydroxy carboxylic acids with chain lengths of up to 90 carbon atoms. The property of acid fastness is related to the carbon chain length of the mycolic acid found in any particular species.

Ziehl- Neelsen Procedure

  • Make a smear. Air Dry. Heat Fix.                                        
  • Flood smear with Carbol Fuchsin stain.      
  • Carbol Fuchsin is a lipid soluble, phenolic compound, which is able to penetrate the cell wall.  
  • Cover flooded smear with filter paper.                                  
  • Steam for 10 minutes. Add more Carbol Fuchsin stain as needed              
  • Cool slide.                                                      
  • Rinse with Distilled water                                            
  • Flood slide with acid alcohol (leave 15 seconds). The acid alcohol contains 3% HCl and 95% ethanol, or you can decolorize with 20% H2SO4,           
  • Tilt slide 45 degrees over the sink and add acid alcohol drop wise (drop by drop) until the red color stops streaming from the semar.    
  • Rinse with Distilled water.                                          
  • Add Loeffler’s Methylene Blue stain (counter stain). This stain adds blue color to nonacid fast cells. Leave Loeffler’s Blue stain on smear for 1 minute.   
  • Rinse slide. Blot dry.                                                  
  • Use oil immersion objective to view.

YEAST VIABILITY STAINING

Principle

Procedure used to determine the proportion of viable yeast in a culture containing a mixture of live and dead yeast cells. Viable cells are able to exclude the stain or reduce it to a colorless form.

Equipment

Microscope with 40X or 100X emersion oil objectives (bright-field, color capable), Microscope slides Cover slips, Pasteur pipettes.

Reagents

1% methylene blue stain

Slide Preparation and Staining

Pipette a small drop of the sample onto a microscope slide. Add a small drop of the methylene blue stain in the center of the sample on the slide and then cover with a cover slip. The methylene blue stain should be diluted approximately one to one by the sample for best results. Allow the slide to sit for 3-10 minutes before counting the proportion of unstained cells. Too short or too long of an incubation will cause underestimation of viability, since live cells will erroneously appear blue.

Friday 28 June 2024

Mendelian Inheritance Law of dominance, Law of Segregation, Law of independent assortment

Content

  • Introduction
  • History
  • Who was Mendel
  • Mendel’s Laws of Heredity
  • Mendel’s Experiments
  • The Rule of Unit Factors
  • Gregor Mendel’s Discoveries
  • Reasons for Choosing Pea Plants
  • Types of Mendel's Laws
    •  Law of Dominance
    •  Law of Segregation
    •  Law of Independent Assortment
  • Mendel’s Conclusions
  • References

Introduction

In plant and animal genetics research, the decisions a scientist will make are based on a high level of confidence in the predictable inheritance of the genes that control the trait being studied. This confidence comes from a past discovery by a biologist named Gregor Mendel, who explained the inheritance of trait variation using the idea of monogenic traits.

  • Living things have genes in their cells that encode the information to control a single trait. These genes are stable and passed on from cell to cell without changing.
  • The genes are in pairs in somatic cells.  When these cells divide to form gametes, the pair of genes is divided.  One gene from the pair goes into a gamete.
  •  Male gametes (pollen) combine with female gametes (eggs) in the wheat flower pistil and fuse to form the next generation (zygote).  Gamete union is random.
  •  The zygote, again, has two copies of each gene. As the zygote grows into a multicellular seed and the seed grows into a plant, the same two gene copies are found in every cell.

He did this over & over & over again, and noticed patterns to the inheritance of traits, from one set of pea plants to the next. By carefully analyzing his pea plant numbers, he discovered three laws of inheritance. After his death (1884) acknowledgment of his discoveries in 1900,

History

In the mid 1800’s, an Austrian monk named Gregor Mendel (Figure 1) decided he should try to understand how inherited traits are controlled.  He needed a model organism he could work with in his research facility, a small garden in the monastery, and a research plan.  His plan was designed to test a hypothesis for the inheritance of trait variation.

Since Mendel could obtain different varieties of peas that differed in easy to observe traits such as flower color, seed color and seed shape, and he could grow these peas in his garden, he chose peas as the model organism for conducting his inheritance control study. A model is easy to work with and often what you learn from the model you can apply to other organisms.


Figure 1. Gregor Mendel was born Johann Mendel.

Mendelian concept of hereditary

The laws of inheritance were derived by Gregor Mendel, a 19th century monk conducting hybridization experiments in garden peas (Pisum sativum). Between 1856 and 1863, he cultivated and tested some 29,000 pea plants. From these experiments he deduced two generalizations which later became known as Mendel's Laws of Heredity or Mendelian inheritance. He described these laws in a two part paper, "Experiments on Plant Hybridization" that he read to the Natural History Society of Bruno on February 8 and March 8, 1865, and which was published in 1866.

Mendel's findings allowed other scientists to predict the expression of traits on the basis of mathematical probabilities. A large contribution to Mendel's success can be traced to his decision to start his crosses only with plants he demonstrated were true-breeding. He also measured only absolute (binary) characteristics, such as color, shape, and position of the offspring, rather than quantitative characteristics. He expressed his results numerically and subjected them to statistical analysis. His method of data analysis and his large sample size gave credibility to his data. He also had the foresight to follow several successive generate (f2, f3) of his pea plants and record their variations. Finally, he performed "test crosses" (back- crossing descendants of the initial hybridization to the initial true-breeding lines) to reveal the presence and proportion of recessive characters. Without his careful attention to procedure and detail, Mendel's work could not have had the impact it made on the world of genetics.

Mendel's Laws


Mendel discovered that by crossing white flower and purple flower plants, the result was not a hybrid offspring. Rather than being a mix of the two, the offspring was purple flowered. He then conceived the idea of heredity units, which he called "factors", one which is a recessive characteristic and the other dominant. Mendel said that factors, later called genes, normally occur in pairs in ordinary body cells, yet segregate during the formation of sex cells. Each member of the pair becomes part of the separate sex cell. The dominant gene, such as the purple flower in Mendel's plants, will hide the recessive gene, the white flower. After Mendel self-fertilized the F1 generation and obtained the 3:1 ratio, he correctly theorized that genes can be paired in three different ways for each trait; AA, aa, and Aa. The capital A represents the dominant factor and lowercase a represents the recessive.

Mendel stated that each individual has two factors for each trait, one from each parent. The two factors may or may not contain the same information. If the two factors are identical, the individual is called homozygous for the trait. If the two factors have different information, the individual is called heterozygous. The alternative forms of a factor are called alleles. The genotype of an individual is made up of the many alleles it possesses. An individual's physical appearance, or phenotype, is determined by its alleles as well as by its environment. An individual possesses two alleles for each trait; one allele is given by the female parent and the other by the male parent. They are passed on when an individual matures and produces gametes: egg and sperm. When gametes form, the paired alleles separate randomly so that each gamete receives a copy of one of the two alleles. The presence of an allele doesn't promise that the trait will be expressed in the individual that possesses it. In heterozygous individuals the only allele that is expressed is the dominant. The recessive allele is present but its expression is hidden. Mendel summarized his findings in two laws; the Law of Segregation and the Law of Independent Assortment.

Law of Segregation (The "First Law")

The Law of Segregation states that when any individual produces gametes, the copies of a gene separate, so that each gamete receives only one copy. A gamete will receive one allele or the other. The direct proof of this was later found when the process of meiosis came to be known. In meiosis the paternal and maternal chromosomes get separated and the alleles with the characters are segregated into two different gametes.

Law of Independent Assortment (The "Second Law")

The Law of Independent Assortment, also known as "Inheritance Law", states that alleles of different genes assort independently of one another during gamete formation. While Mendel's experiments with mixing one trait always resulted in a 3:1 ratio between dominant and recessive phenotypes, his experiments with mixing two traits (dihybrid cross) showed 9:3:3:1 ratios. But the 9:3:3:1 table shows that each of the two genes are independently inherited with a 3:1 ratio. Mendel concluded that different traits are inherited independently of each other, so that there is no relation, for example, between a cat's color and tail length. This is actually only true for genes that are not linked to each other.

Independent assortment occurs during meiosis I in eukaryotic organisms, specifically metaphase I of meiosis, to produce a gamete with a mixture of the organism's maternal and paternal chromosomes. Along with chromosomal crossover, this process aids in increasing genetic diversity by producing novel genetic combinations.

 

In independent assortment the chromosomes that end up in a newly-formed gamete are randomly sorted from all possible combinations of maternal and paternal chromosomes. Because gametes end up with a random mix instead of a pre-defined "set" from either parent, gametes are therefore considered assorted independently. As such, the gamete can end up with any combination of paternal or maternal chromosomes. Any of the possible combinations of gametes formed from maternal and paternal chromosomes will occur with equal frequency. For human gametes, with 23 pairs of chromosomes, the number of possibilities is 2^23 or 8,388,608 possible combinations. The gametes will normally end up with 23 chromosomes, but the origin of any particular one will be randomly selected from paternal or maternal chromosomes. This contributes to the genetic variability of progeny.

Rediscovery of Mendelís work

Mendel's conclusions were largely ignored. Although they were not completely unknown to biologists of the time, they were not seen as generally applicable, even by Mendel himself, who thought they only applied to certain categories of species or traits. A major block to understanding their significance was the importance attached by 19th century biologists to the apparent blending of inherited traits in the overall appearance of the progeny, now known to be due to multigene interactions, in contrast to the organ-specific binary characters studied by Mendel. In 1900, however, his work was "re-discovered" by three European scientists, Hugo de Vries, Carl Correns, and Erich von Tschermak. The exact nature of the "re-discovery" has been somewhat debated: De Vries published first on the subject, mentioning Mendel in a footnote, while Correns pointed out Mendel's priority after having read De Vries's paper and realizing that he himself did not have priority. De Vries may not have acknowledged truthfully how much of his knowledge of the laws came from his own work, or came only after reading Mendel's paper. Later scholars have accused Von Tschermak of not truly understanding the results at all. Regardless, the "re-discovery" made Mendelism an important but controversial theory. Its most vigorous promoter in Europe was William Bateson, who coined the term "genetics", "gene", and "allele" to describe many of its tenets.

The model of heredity was highly contested by other biologists because it implied that heredity was discontinuous, in opposition to the apparently continuous variation observable for many traits. Many biologists also dismissed the theory because they were not sure it would apply to all species, and there seemed to be very few true Mendelian characters in nature. However, later work by biologists and statisticians such as R.A. Fisher showed that if multiple Mendelian factors were involved in the expression of an individual trait, they could produce the diverse results observed. Thomas Hunt Morgan and his assistants later integrated the theoretical model of Mendel with the chromosome theory of inheritance, in which the chromosomes of cells were thought to hold the actual hereditary material, and create what is now known as classical genetics, which was extremely successful and cemented Mendel's place in history.

Mendel's Laws of Inheritance

Mendel postulated three laws, which are now called after his name as Mendel’s laws of heredity. These are:

  1.   Law of dominance and recessive
  2. Law of segregation
  3. Law of independent assortment

1.Law of Dominance

Definition: When two homozygous individuals with one or more sets of contrasting characters are crossed, the characters that appear in the F1 hybrids are dominant characters and those do not appear in F1 are recessive characters.


Law of dominance- If there are two alleles coding for the same trait and one is dominant it will show up in the organism while the other won't

Explanation: The dominance and recessive of genes can be explained on the basis of enzymatic functions of genes. The dominant genes - are capable of synthesizing active polypeptides or proteins that form functional enzymes, whereas the recessive genes (mutant genes) code for incomplete or non-functional polypeptides. Therefore, the dominant genes produce a specific phenotype while the recessive genes fail to do so. In the heterozygous condition also, the dominant gene is able to express itself, so that the heterozygous and homozygous individuals have similar phenotype.

Critical appreciation of Law of Dominance

Scientists conducted cross-breeding experiments to find out the applicability of law of dominance. The experiments were conducted by Correns on peas and maize, Tschermak on peas, by De Vries on maize etc., by Bateson and his collaborators on a variety of organisms, by Davenport on poultry, by Furst on rabbits, by Toyama on silk moth and by many others. These scientists observed that a large number of characters in various organisms are related as dominant and recessive.

Importance of law of dominance

The phenomenon of dominance is of practical importance as the harmful recessive characters are masked by the normal dominant characters in the hybrids. In Human beings a form of idiocy, diabetes, haemophilia etc. are recessive characters. A person hybrid for all these characteristics appears perfectly normal. Thus harmful recessive genes can exist for several generations without expressing themselves.

Exceptions to Law of Dominance is the Incomplete Dominance. After Mendel several cases were recorded by scientists, where F1 hybrids exhibited a blending of characters of two parents. These hybrids were found to be midway between the two parents. This is known as incomplete dominance or blending inheritance. It means that two genes of the allelomorphic pair are not related as dominant and recessive, but each of them expresses itself partially. As for example, in four-o'clock plant, Mirabilis jalapa, when plants with red flowers (RR) are crossed with plants having white flowers (rr), the hybrid F1 plants (Rr) bear pink flowers. When these F1 plants with pink flowers are self-pollinated they develop red (RR), pink (Rr) and white (IT) flowered plants in the ratio of 1 : 2 : 1 (F2 generation).

2.  Law of Segregation (Purity of Gametes)

Explanation - The law of segregation states that when a pair of contrasting factors or genes or allelomorphs are brought together in a heterozygote (hybrid) the two members of the allelic pair remain together without being contaminated and when gametes are formed from the hybrid, the two separate out from each other and only one enters each gamete.

Example - Pure tall plants are homozygous and, therefore/possess genes (factors) TT; similarly, dwarf possess genes tt. The tallness and dwarfness are two independents but contrasting factors or

determiners. Pure tall plants produce gametes all of which possess gene T and dwarf plants t type of gametes.

During cross fertilization gametes with T and t unite to produce hybrids of F1 generation. These hybrids possess genotype Tt. It means F1 plants, though tall phenotypically, possess one gene for tallness and one gene for dwarfness. Apparently, the tall and dwarf characters appear to have become contaminated developing only tall character. But at the time of gamete formation, the genes T (for tallness) and t (for dwarfness) separate and are passed on to separate gametes. As a result, two types of gametes are produced from the heterozygote in equal numerosity. 50% of the gametes possess gene T and other 50% possess gene t. Therefore, these gametes are either pure for tallness or for dwarfness. (This is why the law of segregation is also described as Law of purity of gametes).

Gametes unite at random and when gametes are numerous all possible combinations can occur, with the result that tall and dwarf appear in the ratio of 3 :1. The results are often represented by Punnett square as follows:

 

Critical appreciation of law of segregation

It has been confirmed by cytological studies that dominance or no dominance, the law of segregation holds good to all cases. Its far reaching applicability has made it rare biological generalization. 

  • RR have only gene for round 
  • Rr, rR have gene for round and wrinkle 
  • Rr  have only wrinkeld gene

Round, Wrinkled - 3:1 ratio

 

 

 


3.  Law of Independent Assortment

Definition: The inheritance of more than one pair of characters (two pairs or more) is studied simultaneously, the factors or genes for each pair of characters assort out independently of the other pairs. Mendel formulated this law from the results of a dihybrid cross.

Explanation: The cross was made between plants having yellow and round cotyledons and plants having green and wrinkled cotyledons.

The F1 hybrids all had yellow and round seeds. When these F1 plants were self fertilized they produced four types of plants in the following proportion:

(i)      Yellow and round              9

(ii) Yellow and wrinkled

3

(iii) Green and round

3

(iv) Green and wrinkled

1


The above results indicate that yellow and green seeds appear in the ratio of 9 + 3 : 3 + 1 = 3 : 1. Similarly, the round and wrinkled seeds appear in the ratio of 9 + 3 : 3 +1 = 12:4 or 3 :1. This indicates that each of the two pairs of alternative characters viz. yellow-green cotyledon colour is inherited independent of the round-wrinkled character of the cotyledons. It means at the time of gamete formation the factor for yellow colour enters the gametes independent of R or r, i.e, gene Y can be passed on to the gametes either
with gene R or r.


Cytological explanation of the results: In the above experiment yellow and round characters are dominant over green and wrinkled characters which can be represented as follows:

  1.  gene for yellow colour of cotyledons                            Y
  2. gene for green colour of cotyledons                              y
  3.  gene for round character of cotyledons                          R
  4.  gene for wrinkled character of colyledons                      r

Therefore, plants with yellow and round cotyledons will have their genotype YYRR and those with green and wrinkled cotyledons will have a genotype yyrr. These plants will produce gametes with gene YR and yr respectively. When these plants are cross pollinated, the union of these gametes will produce F1 hybrids with YyRr genes. When these produce gametes all the four genes have full freedom to assort independently and, therefore, there are possibilities of four combinations in both male and female gametes.

(i) RY                (ii) Ry              (iii) rY                    (iv) ry

This shows an excellent example of independent assortment. These gametes can unite at random producing in all 16 different combinations of genes, but presenting four phenotypes in the ratio of         9: 3: 3: 1.

Dihybrid ratio: RR yy - Round, yellow seeded ; Rr yy - Wrinkled and greed seeded

 



 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Test cross

F1                  Rr Yy           x             rr yy (recessive) 1:1:1:1

Critical appreciation of law of Independent Assortment-

The law of independent assortment fails to have a universal applicability. Cytological studies have revealed that only those allelomorphs assort independently during meiosis, which are located in different homologous pairs of chromosomes. But, if the allelomorphs for different characters are present in the same homologous pair of chromosomes, these are passed on to the same gamete. Law of independent assortment does not apply to such cases.

BIOLOGICAL SIGNIFICANCE OF MENDEL'S LAWS

Mendel's work remained burried for about three decades, but after its rediscovery, the laws are being used for the various branches of breeding. These are use for improving the varieties of fowls and their eggs; in obtaining rust-resistant and disease-resistant varieties of grains. Various new breeds of horses and dogs are obtained by cross breeding experiments. The science of Eugenics is the outcome of Mendelism, which deals with the betterment of human race.

Mendelian deviation

Mendelian deviations or exceptions or anomalies includes

      1.  Incomplete dominance
      2.  Codominance
      3.  Lethal genes etc.

1.  Incomplete dominance

Mendel always observed complete dominance of one allele over the other for all the seven characters, which he studied, in garden pea. Later on cases of incomplete dominance were reported. For example, in four ëoí clock plant (Mirabilis jalapa) there are two types of flower viz., red and white. A cross between red and white flowered plants produced plants with intermediate flower colour i.e. pink colour in F1 and a modified ratio of 1 red: 2 pink: 1 White in F2.

Parents                      Red flower       x             White 

                                   flower RR     x             rr

F1                                  Rr pink flower

F2               1 Red (Rr)     :     2 Pink (RR)     : 1 White (rr)

     Fig.-Incomplete dominance in flowers of Mirabilis jalapa

 

2.  Codominance

In case of codominance both alleles express their phenotypes in heterozygote greater than an intermediate one. The example is AB blood group in human. The people who have blood type AB are heterozygous exhibiting phenotypes for both the IA and IB alleles. In other words, heterozygotes for codominant alleles are phenotypically similar to both parental types. The main difference between codominance and incomplete dominance lies in the way in which genes act. In case of codominance both alleles are active while in case of incomplete dominance both alleles blend to make an intermediate one.

                                   Codominance - both genes fully expressed

3. Lethal genes

Gene, which causes the death of its carrier when in homozygous condition is called lethal gene. Mendel’s findings were based on equal survival of all genotypes. In normal segregation ratio of 3:1 is modified into 2:1 ratio. Lethal genes have been reported in both animals as well as plants. In mice allele for yellow coat colour is dominant over grey. When a cross is made between yellow and grey a ratio of 1:1 for yellow and gray mice was observed. This indicated that yellow mice are always heterozygous. Because yellow homozygotes are never born because of homozygous

lethality. Such genes were not observed by Mendel. He always got 3:1 ratio in F2 for single gene characters.

Lethal genes can be recessive, as in the aforementioned mouse experiments. Lethal genes can also be dominant, conditional, semilethal, or synthetic, depending on the gene or genes involved.


MONOHYBRID CROSS

A cross is made between two true-breeding parents differing for a single trait, producing an F1 generation. These plants are intercrossed to produce an F2 generation.


Dihybrid Crosses

The following legends were described for peas by Mendel:

T- Tall

tt - dwarf

G - green (pod) gg- yellow

Pure breeding parents can be crossed to produce a dihybrid meaning that 2 genes affecting different traits are heterozygous (segregating) in all the f1 progeny.

Examples: TT, GG X tt, gg                 →       Tt, Gg

          TT, gg X tt, GG                 →                       Tt, Gg

When the F1 is self-fertilized (plants) or crossed with another Tt, Gg individual, the progeny will show the expected 3 dominant : 1 recessive phenotypic ratio for each trait. If the two traits are independent, the two 3 : 1 ratios will interact to give a ratio based on 16ths.

#

Genotypes

Phenotypes

9  

T_, G_

Tall, Green

3  

T_, gg

Tall, yellow

3

tt, G_

Dwarf, Green

1

tt, gg

Dwarf, Yellow


Backcross

           Backcrossing is a crossing of a hybrid with one of its parents or an individual genetically similar to its parent, in order to achieve offspring with a genetic identity which is closer to that of the parent.

The Testcross

Because some alleles are dominant over others, the phenotype of an organism does not always reflect its genotype. A recessive phenotype (yellow) is only expressed with the organism is homozygous recessive (gg). A pea plant with green pods may be either homozygous dominant (GG) or heterozygous (Gg). To determine whether an organism with a dominant phenotype (e.g. green pod color) is homozygous dominant or heterozygous, you use a testcross.

The breeding of an organism of unknown genotype with a homozygous recessive. If all the progeny of the testcross have green pods, then the green pod parent was probably homozygous dominant since a GG x gg cross produces Gg progeny. If the progeny of the testcross contains both green and yellow phenotypes, then the green pod parent was heterozygous since a Gg x gg cross produces Gg and gg progeny in a 1:1 ratio. The testcross was devised by Mendel and is still an important tool in genetic studies.

Conclusion

  • Genes are distinct entities that remain unchanged during crosses
  • Each plant has two alleles of a gene
  • Alleles segregated into gametes in equal proportions, each gamete got only one allele
  •  During gamete fusion, the number of alleles was restored to two

Reference

  • https://www.sscollegejehanabad.org/studymaterial/1970411271Mendelian%20Laws%20of%20Inheritance.pdf
  • https://www.researchgate.net/publication/323914787_Mendel's_Laws
  • http://www.nature.com/scitable/topicpage/gregor-mendel-and-the-principles-of-inheritance-593
  • https://www.britannica.com/science/Mendelian-inheritance
  • https://www.dnaftb.org/1/bio.html

B Cell development maturation selection immunology

 Index          Introduction          History          Overview of normal human haematopoiesis           Properties of B Cell          Types...